Team

Lab PI

Hua Xu, PhD

Robert T. McCluskey Professor of Biomedical Informatics and Data Science; Vice Chair for Research and Development, Section of Biomedical Informatics and Data Science; Assistant Dean for Biomedical Informatics, Yale School of Medicine

Dr. Hua Xu is a well-known researcher in clinical natural language processing (NLP). He has developed novel algorithms for important clinical NLP tasks such as entity recognition and relation extraction, which have been top ranked in over a dozen of international biomedical NLP challenges. His lab has developed CLAMP, a comprehensive clinical NLP toolkit that has been successfully commercialized and used by hundreds of healthcare organizations. Moreover, he has led multiple national/international initiatives (e.g., Chair of the NLP working group at Observational Health Data Sciences and Informatics - OHDSI program) to apply developed NLP technologies to diverse clinical and translational studies, thus greatly accelerating clinical evidence generation using electronic health records data. Recently, he also utilizes NLP to harmonize metadata of biomedical digital objects (e.g., indexing millions of biomedical datasets to make them findable), with the goal to promote FAIR principles in biomedicine.

Faculty

Na Hong, PhD

Instructor of Biomedical Informatics and Data Science

Kalpana Raja, PhD, MRSB, CSci

Instructor of Biomedical Informatics and Data Science

Huan He, PhD

Research Scientist in Biomedical Informatics and Data Science

Vipina K. Keloth, PhD

Associate Research Scientist in Biomedical Informatics and Data Science

Brian Ondov, PhD

Associate Research Scientist in Biomedical Informatics and Data Science

Qianqian Xie, PhD

Associate Research Scientist in Biomedical Informatics and Data Science

Staff

Christopher Gilman

Software Engineer

Kijana Richmond

Software Engineer

Christian Horgan

Software Engineer

Vincent Zhang

Software Engineer

Mukund Aravapalli

Software Engineer

Ahmed Abdelhady

Software Engineer

João Cardoso

Software Engineer

Winnie Ng

Software Engineer

Pritham Ram

Program Manager

Alexander Schwartz

Program Manager

Polly Painter

Program Manager

Zachary Chen

Jr. Program Manager

Xuguang Ai

Software Engineer

Yujia Zhou

Data Analyst

Sooyoun Tan

Senior Web Designer

Daniela Weng

Web Designer

Postdocs

Xueqing Peng, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Jeffrey Zhang, PhD

Postdoctoral Fellow in Biomedical Informatics and Data Science

Yan Wang, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Lingfei Qian, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Anran Li, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Weipeng Zhou, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Yang Ren, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Chia-Hsuan Chang, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Fan Ma, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Kriti Bhattarai, PhD

Postdoctoral Associate in Biomedical Informatics and Data Science

Students

Yan Hu

PhD Student

Xu Zuo

PhD Student

Kevin Jin

PhD Student

Yuntian Liu

PhD Student

Zhiyuan Cao

PhD Student

Gui Yang

Intern Student

Rui Shi

Intern Student

David Cole Shafer-Ray

Clinical Annotator

Kayla Sokunle

Clinical Annotator

Dingwei Zhan

Capstone Project Student

Qinghan Hu

Capstone Project Student

Amy (Siyan) Guo

Capstone Project Student

Haoting (Joanne) Chen

Capstone Project Student

Yi-chung (Joy) Wang

Capstone Project Student

Ziqing (Kaylin) Ji

Capstone Project Student

Wei Pang

Capstone Project Student

Yingxue Pan

Capstone Project Student

Lab Alumni

Qingyu Chen, PhD

Associate Research Scientist of Biomedical Informatics and Data Science

Fongci Lin, PhD

Associate Research Scientist in Biomedical Informatics and Data Science

Ira Einbinder

Software Engineer

Malaika El Hamel

Senior Administrative Assistant

Jimin Huang

Data Scientist

Max Wibert

Research Assistant

Bin Choi

Intern Student

Ryan Denlinger, PhD

Software Engineer

Buzhou Tang, PhD

Postdoctoral Fellow

Guocai Chen, PhD

Postdoctoral Fellow

Ergin Soysal, M.D., Ph.D.

Postdoctoral Fellow

Sungrim (Riea) Moon, PhD

Postdoctoral Fellow

Yaoyun Zhang, PhD

Postdoctoral Fellow

Jun Xu, PhD

Postdoctoral Fellow

Hee-jin Lee, PhD

Postdoctoral Fellow

Zongcheng Ji, PhD

Postdoctoral Fellow

Alice Nono Djotsa, PhD

Postdoctoral Fellow

Omid Ghiasvand, PhD

Postdoctoral Fellow

Qiang Wei, PhD

Postdoctoral Fellow

Avisha Das, PhD

Postdoctoral Fellow

Jianbo Lei, PhD

PhD Student

Yukun Chen, PhD

PhD Student

Min Jiang, PhD

PhD Student

Jun Li, PhD

PhD Student

Lian Hu, PhD

PhD Student

Lingyi Tang, PhD

PhD Student

Qiang Wei, PhD

PhD Student

Xiao Dong, PhD

PhD Student

Yiming Li, PhD

PhD Student